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GCC 2017 has ended
The 2017 Galaxy Community Conference (GCC2017) is being held in Montpellier, France, 26-30 June.  GCC2017 will include keynotes and accepted talks, poster sessions, demos, birds-of-a-feather meetups, exhibitors, and plenty of networking opportunities. There will also be three days of pre-conference activities, including hackathons and training. If you work in data-intensive biomedical research, there is no better place than GCC2017 to present your work and to learn from others.

The full printed program is also available.
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Friday, June 30 • 17:36 - 17:42
Parsec: Intergalactic DevOps and Analysis Automation

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➔ Slides

Authors
Eric Rasche 1

1 : Center for Phage Technology, Texas A&M University  (CPT)


Abstract
Parsec is a new tool which allows users to build simple command line pipelines based on bioblend functions, all without writing a single line of python. Perfect for everything from quick access to administrative functions (adding / removing users from groups), all the way to more complex tasks (filtering a list of histories and doing some operation on all of them.) Parallel projects exist for the python-chado and python-apollo libraries. We have experimented with generating Galaxy tools in addition to the command line tools.
Presenters
avatar for Eric Rasche

Eric Rasche

Sysadmin / Bioinformatician, Center for Phage Technology @ Texas A&M University

S8 L11 parsec pdf
Friday June 30, 2017 17:36 - 17:42
Einstein Auditorium Le Corum, Level 0
  E.5 Conference - Lightning Talks   E.x Conference - All

Attendees (9)