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The 2017 Galaxy Community Conference (GCC2017) is being held in Montpellier, France, 26-30 June.  GCC2017 will include keynotes and accepted talks, poster sessions, demos, birds-of-a-feather meetups, exhibitors, and plenty of networking opportunities. There will also be three days of pre-conference activities, including hackathons and training. If you work in data-intensive biomedical research, there is no better place than GCC2017 to present your work and to learn from others.
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Thursday, June 29 • 15:40 - 17:00
D03: De novo transcriptome annotation visualization and filtering

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Eduardo De Paiva Alves 1

1 : Centre for Genome-Enabled Biology and Medicine, University of Aberdeen  (CGEBM), 23 St Machar Dr, Aberdeen, UK AB24 3UU -  United Kingdom

De novo transcriptomes lack genome level coordinates and are frequently fragmented or contain chimeric sequences or multiple copies of the same region. These issues pose several difficulties for annotation, since protein predictions may appear in multiple contigs which correspond to the same transcript, may be fragmented over multiple contigs, or one single contig may have more than one protein prediction in the case of chimeric sequences. We present a Galaxy tool which allows for visualization of annotation predictions from the prediction sequence and allow the user to select the contigs that best match the predictions and export the filtered results.


Eduardo De Paiva Alves

Centre for Genome-Enabled Biology and Medicine, University of Aberdeen (CGEBM)

Thursday June 29, 2017 15:40 - 17:00
Le Corum Le Corum

Attendees (6)