GCC 2017 has ended
The 2017 Galaxy Community Conference (GCC2017) is being held in Montpellier, France, 26-30 June.  GCC2017 will include keynotes and accepted talks, poster sessions, demos, birds-of-a-feather meetups, exhibitors, and plenty of networking opportunities. There will also be three days of pre-conference activities, including hackathons and training. If you work in data-intensive biomedical research, there is no better place than GCC2017 to present your work and to learn from others.

The full printed program is also available.
Back To Schedule
Thursday, June 29 • 15:40 - 17:00
P15: The MiModD suite of tools for genetic variant mapping and identification

Sign up or log in to save this to your schedule, view media, leave feedback and see who's attending!



Wolfgang Maier 1*, Mark Seifert 1, Katharina Moos, Gregory Minevich, Oliver Hobert 2, Ralf Baumeister 1
1 : University of Freiburg
2 : Department of Biological Sciences, Columbia University
* : Corresponding author

MiModD (http://www.celegans.de/mimodd) is a GPLv3-licensed comprehensive tool suite for variant mapping and identification. It extends ideas and concepts found in CloudMap, for which it can serve as a drop-in replacement. The package features: 
  • a fully integrated mapping-by-sequencing analysis pipeline without external dependencies 
  • multisample variant calling and filtering for improved call statistics and straightforward variant identification 
  • NacreousMap linkage analysis and plotting engine with full compatibility, but improvements over CloudMap. 
The current version of MiModD is available from the Galaxy Tool Shed, but we would like to propose its inclusion on the Galaxy main server as a replacement for the deprecated CloudMap suite of tools.

avatar for Wolfgang Maier

Wolfgang Maier

Member of the Galaxy Europe team, University of Freiburg
University of Freiburg

Thursday June 29, 2017 15:40 - 17:00 CEST
Le Corum Le Corum

Attendees (3)