GCC 2017 has ended
The 2017 Galaxy Community Conference (GCC2017) is being held in Montpellier, France, 26-30 June.  GCC2017 will include keynotes and accepted talks, poster sessions, demos, birds-of-a-feather meetups, exhibitors, and plenty of networking opportunities. There will also be three days of pre-conference activities, including hackathons and training. If you work in data-intensive biomedical research, there is no better place than GCC2017 to present your work and to learn from others.

The full printed program is also available.
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Thursday, June 29 • 15:40 - 17:00
P09: Wrapping tools: on the shoulders of the GCC community

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 ➔ Poster (doi: 10.7490/f1000research.1114387.1)


Valentin Marcon 1, Nathalie Choisne 2, Veronique Jamilloux 2, Gwendoline Andres, Isabelle Luyten 2, Joelle Amselem 2, Mikael Loaec 2, Françoise Alfama-Depauw 2, Sarah Maman-Haddad 3, Melanie Petera 4, Luc Jouneau 5, Sandrine Laguerre 6, Olivier Inizan 1 

1 : MaIAGE, Institut National de la Recherche Agronomique - INRA, Centre de Jouy-en-Josas Domaine de Vilvert, France
2 : Unité de Recherche Génomique Info  (URGI), Institut National de la Recherche Agronomique - INRA, Centre de recherche de Versailles, France
3 : Génétique Physiologie et Systèmes d'Elevage  (GenPhySE), Institut national de la recherche agronomique [Toulouse], France
4 : Unité de Nutrition Humaine  (UNH), Institut national de la recherche agronomique (INRA)
5 : Unité de recherche Virologie et Immunologie Moléculaires  (VIM), Institut National de la Recherche Agronomique, INRA Centre de Recherche de Jouy-en-Josas, France
6 : l'Ingénierie des Systèmes Biologiques et des Procédés  (LISBP), Institut National des Sciences Appliquées de Toulouse, France

This year at the Galaxy Community Conference, the Galaxy project will celebrate its 12th anniversary. Twelve years where the Accessibility, Reproducibility and Transparency (ART) of the bio-analyses have been the principal concern of the developers of this framework. Today the project offers improved development methods with a set of good practices ensuring the ARTnature of the analysis.

French community has always been active in tools development. This resulted to a large heterogeneity of wrappers, some of them not having benefited from recent advances in terms of good practices. The goal of the project “Galaxy For Life Science” (GFLS) is to bring to several french communities the recent good practices established by the galaxy community developers. The raw material of the project is a set of wrappers and workflows grouped in several use cases: plant science, statistical analysis, livestocks, bacterias.

In this poster we want to present 2 use cases implemented in the project : statistical analysis and plant science. These use cases are interesting because it is possible for the first one to fully apply a set of good practices while we choose to make concessions for the second one. A second interesting result is that we are able to identify a generic and reproducible method of work for any initiative to make tools available under Galaxy, matching with the community's way of working.


Thursday June 29, 2017 15:40 - 17:00 CEST
Le Corum Le Corum

Attendees (3)