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The 2017 Galaxy Community Conference (GCC2017) is being held in Montpellier, France, 26-30 June.  GCC2017 will include keynotes and accepted talks, poster sessions, demos, birds-of-a-feather meetups, exhibitors, and plenty of networking opportunities. There will also be three days of pre-conference activities, including hackathons and training. If you work in data-intensive biomedical research, there is no better place than GCC2017 to present your work and to learn from others.
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Friday, June 30 • 10:00 - 10:20
Comparing hundreds of RNA-seq libraries using Galaxy and SeqResults

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Slides (web)


Brad Langhorst, New England Biolabs (NEB)

Transcript abundance, aligment rate, Spike-in abundance, 5'-3' coverage, GC distribution and library diversity are all important quality factors in the context of RNA-seq experiments. We describe the infrastructure in Galaxy to assess library performance across these dimensions, the tools we use to aggregate results in a relational database, and data interpretation methods. Interactive visualization features allow bench scientists to correlate metadata with results, compare transcript levels, select and examine individual transcript properties from the hundreds of thousands of available results. 

avatar for Brad Langhorst

Brad Langhorst

New England Biolabs (NEB)

Friday June 30, 2017 10:00 - 10:20
Einstein Auditorium Le Corum, Level 0

Attendees (19)