➔ Slides @ F1000
Authors
Eric Rasche, Center for Phage Technology, Texas A&M University (CPT)
Björn Grüning, Department of Computer Science [Freiburg]
Nathan Dunn, Lawrence Berkeley National Laboratory (LBNL)
Anthony Bretaudeau, BIPAA/GenOuest
Abstract
GMOD projects have long provided powerful open-source tools to the bioinformatics community, but have historically been hard to configure and integrate. The Galaxy Genome Annotation (GGA) group provides a highly integrated set of Dockerized GMOD projects allowing for more widespread use of these tools in new contexts for system administrators wishing to deploy the suite. Our projects include maintenance of the Galaxy-Apollo bridge tools, Galaxy-Tripal and Chado tooling, and containerized versions of various GMOD projects which are configured to easily integrate with the rest of the suite.
This talk will explore the use of this suite in the context of a real life use-case, an undergraduate phage annotation course. We will cover the GGA suite as well as various integrations, workflows, training materials, and tools that were built and made available in support of GGA.
