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The 2017 Galaxy Community Conference (GCC2017) is being held in Montpellier, France, 26-30 June.  GCC2017 will include keynotes and accepted talks, poster sessions, demos, birds-of-a-feather meetups, exhibitors, and plenty of networking opportunities. There will also be three days of pre-conference activities, including hackathons and training. If you work in data-intensive biomedical research, there is no better place than GCC2017 to present your work and to learn from others.
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Wednesday, June 28 • 09:00 - 11:30
Galaxy Architecture

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Want to know the big picture about what is going on inside Galaxy? This workshop will give participants a practical introduction to the Galaxy code base with a focus on changing those parts of Galaxy most often modified by local deployers and new contributors.

The workshop will include the following specific content:

  • A description of the various file and top-level directories in the Galaxy code base.
  • An overview of important Python modules - including models, tools, jobs, workflows, visualisations, and API controllers.
  • An overview of important Python objects and concepts in the Galaxy codebase - including the Galaxy transaction object ("trans"), the application object ("app") , and the configuration object ("config").
  • An overview of various plugin extension points. - An overview of important JavaScript modules that power the front-end.
  • An overview of important JavaScript concepts used by Galaxy - in particular RequireJS, Backbone MVC, and grunt.
  • An overview of the client build system used to generate compressed JavaScript, cascading stylesheets, and other static web assets. 
  • A demonstration of a complete start-to-finish modification of Galaxy - including forking the project on Github, modifying files, running the tests, checking style guidelines, committing the change, pushing it back to your local Github fork, and opening a pull request. 
  • A brief description of other projects in the Galaxy ecosystem (CloudMan, the Tool Shed, bioblend, docker-galaxy-stable, Pulsar, and Planemo).

Instructors
avatar for John Chilton

John Chilton

Galaxy Project, Penn State University
avatar for Nate Coraor

Nate Coraor

Galaxy Project, Penn State University


Wednesday June 28, 2017 09:00 - 11:30
Barthez Room Level 2, Le Corum

Attendees (26)