Loading…
This event has ended. View the official site or create your own event → Check it out
This event has ended. Create your own
The 2017 Galaxy Community Conference (GCC2017) is being held in Montpellier, France, 26-30 June.  GCC2017 will include keynotes and accepted talks, poster sessions, demos, birds-of-a-feather meetups, exhibitors, and plenty of networking opportunities. There will also be three days of pre-conference activities, including hackathons and training. If you work in data-intensive biomedical research, there is no better place than GCC2017 to present your work and to learn from others.

The full printed program is also available.
View analytic
Tuesday, June 27 • 12:30 - 15:00
RNAseq analysis in Galaxy

Sign up or log in to save this to your schedule and see who's attending!

➞ Slides

This workshop will introduce the concepts behind transcriptomics with NGS data and how to analyze this data in Galaxy. Specifically, this workshop will focus on de novo transcriptome reconstruction of RNA-seq data with the following goals:

  • comprehensive identification of all transcripts across an experiment
  • appropriately annotating classes of transcripts
  • generating abundance estimates across a transcriptome
  • significance testing of differentially expressed transcripts
  • visualisation of reads and transcript structures with Trackster
Prerequisites
  • a general knowledge of Galaxy (for example, you should be familiar with the material in Galaxy 101 or have attended Introduction to Galaxy).
  • a wi-fi enabled laptop with a modern web browser. Google Chrome, Firefox and Safari will work best. 

Instructors
avatar for Mallory Freeberg

Mallory Freeberg

Galaxy Project, Johns Hopkins University
Johns Hopkins University
avatar for Mo Heydarian

Mo Heydarian

Galaxy Project, Johns Hopkins University


Tuesday June 27, 2017 12:30 - 15:00
Barthez Room Level 2, Le Corum

Attendees (21)