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GCC 2017

The 2017 Galaxy Community Conference (GCC2017) is being held in Montpellier, France, 26-30 June. GCC2017 will include keynotes and accepted talks, poster sessions, demos, birds-of-a-feather meetups, exhibitors, and plenty of networking opportunities. There will also be three days of pre-conference activities, including hackathons and training. If you work in data-intensive biomedical research, there is no better place than GCC2017 to present your work and to learn from others.

The full printed program is also available.

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08:00 CEST

Conference desk open Le Corum

09:00 CEST

GCC2017 Opening and Welcome Einstein AuditoriumOlivier Inizan • Marilyne Summo

09:15 CEST

The Evolution of Galaxy: A Rough Timeline Einstein AuditoriumAnton Nekrutenko • James Taylor Session 1: Galaxy Framework Einstein AuditoriumJeremy Goecks

10:00 CEST

Bioconda and BioContainers - Enabling Universal Reproducibility in Galaxy Einstein AuditoriumJohn Chilton

10:20 CEST

Building an open, collaborative, online infrastructure for bioinformatics training Einstein AuditoriumBérénice Batut

10:40 CEST

11:10 CEST

An Educational Framework for Galaxy Administration Einstein AuditoriumNate Coraor • Simon Gladman Session 2: Galaxy Framework, continued Einstein AuditoriumDave Clements

11:30 CEST

Integrative analysis of hundreds of datasets in Galaxy Einstein AuditoriumGeir Kjetil Sandve

11:50 CEST

Galaxy Genome Annotation Project: Galaxy and GMOD for Annotation, Teaching, and Genomic Databases Einstein AuditoriumEric Rasche

12:10 CEST

Apollo in Galaxy: Increasing Opportunities for Collaborative Genome Annotation Einstein AuditoriumNathan Dunn

12:30 CEST

Galaxy at the IFB: From computing to training Einstein AuditoriumVictoria Dominguez del Angel • Christophe Caron

12:45 CEST

Lunch Le Corum Arts & Crafts & CTF TBASaskia Hiltemann • Eric Rasche Birds-of-a-Feather (BoF) Flocking Session 1 Le Corum

12:50 CEST

Reproducibility best practices for computational analyses involving large numbers of datasets BoF BoF Space 1, Antigone RoomGeir Kjetil Sandve Supporting the non-coder Galaxy community BoF BoF Space 2, Antigone RoomPeter van Heusden

13:45 CEST

Galaxy Community Update Einstein AuditoriumDan Blankenberg • Jeremy Goecks Session 3: Tools and Workflows Einstein AuditoriumNicola Soranzo

14:20 CEST

The Year of IUC Einstein AuditoriumBjörn Grüning

14:40 CEST

Workflow4Metabolomics: Towards an international computing infrastructure and a tools showcase for Metabolomics Einstein AuditoriumGildas Le Corguillé • Franck Giacomoni

15:00 CEST

South Green Galaxy: a suite of tools for plant genomics Einstein AuditoriumJean-François Dufayard

15:20 CEST

Performing Next Generation Phylogenetic Analyses with NGPhylogeny.fr Einstein AuditoriumDamien Correia

15:40 CEST

Break, Sponsors, Posters, and Demos Session Le Corum Poster Session 1: Odd numbers Le Corum P01: Galaxy-docker-ansible Le CorumRuben Vorderman P03: Automated customized deployment Galaxy portal instance in IFB Cloud Computing Le CorumSandrine Perrin P05: The EDAM ontology and its integration into Galaxy Le CorumHervé Ménager P07: myFAIR Analysis: Personal FAIR Data Management and Analysis Le CorumSaskia Hiltemann P09: Wrapping tools: on the shoulders of the GCC community Le CorumValentin Marcon P11: Utility scripts for data manipulation in Galaxy Le CorumSimon Gladman P13: Prioritizing SNPs using the Neo4j Galaxy Interactive Environment Le CorumPeter van Heusden • Ziphozakhe Mashologu • Lose Thoba P15: The MiModD suite of tools for genetic variant mapping and identification Le CorumWolfgang Maier P17: ProteoRE, a Galaxy-based infrastructure for interpreting and exploring mass spectrometry-based proteomics data Le CorumLien Nguyen P19: A reproducible data analysis environment for next-generation sequencing on public cloud computer Le CorumManabu Ishii P21: Deployment of genome databases for insects using Galaxy Genome Annotation Le CorumAnthony Bretaudeau P23: Detecting somatic de-novo Transposable Element insertions with Galaxy Le CorumMarius van den Beek P25: Galaxy and the full spectrum of needs in a small-scale cancer study Le CorumChristin Lund-Andersen P27: ASaiM: a Galaxy-based framework to analyze raw sequencing data from microbiota Le CorumBérénice Batut P29: Developing a bioinformatics pipeline for optimization of sperm epigenome analysis in mice and men to be used for the identification of epigenetic signatures in sperm associated with environmental perturbat... Le CorumDeepak Tanwar P31: In silico toxicity assessment in cultured rat intestinal cells deduced from cellular impedance measurements and transcriptomics data Le CorumPooja Gupta P33: Using Galaxy as a platform for continuous software development Le CorumGeir Kjetil Sandve • Boris Simovski Demo Session 1: Odd numbers Le Corum D01: Integration of Linked Data into Galaxy using AskOmics Le CorumXavier Garnier D03: De novo transcriptome annotation visualization and filtering Le CorumEduardo De Paiva Alves Sponsor Exhibition Le Corum

17:00 CEST

The Institute of Computational Biology: an overview Einstein AuditoriumEric Rivals Session 4 Einstein AuditoriumBérénice Batut

17:30 CEST

Improving Your Text Life Einstein AuditoriumJames Johnson Lightning Talks Thursday Einstein AuditoriumBérénice Batut

17:36 CEST

Galaxy-E : Towards an accessible, reproducible and transparent data analysis and management universe dedicated to Ecology Einstein AuditoriumValintin Chambon • Thimothée Virgoulay

17:42 CEST

The Galaxy Gateway on F1000Research Einstein AuditoriumHolly Murray

17:48 CEST

GalaxyCat - The online catalog of Galaxy tools across instances Einstein AuditoriumStéphanie Le Gras • Julien Seiler

17:54 CEST

Analyzing Relationships among Clinical Factors of Cancer Patients by Regression Analysis Einstein AuditoriumSugandima Vidanagamachchi

18:00 CEST

Birds-of-a-Feather (BoF) Flocking Session 2 Le Corum

18:05 CEST

GalaxyAdmins BoF Lobby, Level 0Dave Clements Genome Annotation in Galaxy BoF BoF Space 1, Antigone RoomAnthony Bretaudeau • Nathan Dunn • Björn Grüning • Eric Rasche

19:00 CEST

Gala Dinner Chateau du Pouget